################################################################################ ############ Matrix comparison V1.0 ############ Input files: ## Motif file (e.g. MEME): /Network/Servers/bionode/Volumes/Users/amonida/Work/MEME/meme_text_fickett_data_original_anr_15mtfs_8-12_6minsites.txt ## Database file: /Network/Servers/bionode/Volumes/Users/amonida/Work/Matrices/jaspar_matrices_vertebrates.mat ## Level of conservation: 60% ################################################################################ MOTIF_1 11 MA0052 MEF2 (10) 0.6792 [ 1 -> 10] - [ 2 -> 11] MA0025 E4BP4 (11) 2.8356 [ 1 -> 8] - [ 4 -> 11] MA0083 SRF (12) 2.4189 [ 1 -> 10] - [ 3 -> 12] MA0069 Pax6 (14) 2.2339 [ 5 -> 11] - [ 1 -> 7] MA0108 TBP (15) 1.2651 [ 4 -> 11] - [ 1 -> 8] MA0060 NF-Y (16) 3.6475 [ 1 -> 6] - [11 -> 16] MA0051 Irf-2 (18) 2.3218 [ 1 -> 6] - [13 -> 18] MA0066 PPARgamma (20) 2.8773 [ 1 -> 6] - [15 -> 20] MA0007 Androgen (22) 3.3717 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 1.8936 [ 2 -> 11] - [ 1 -> 10] MA0080 SPI-1 ( 6) 3.1791 [ 1 -> 6] - [ 3 -> 8] MA0063 Nkx ( 7) 3.2229 [ 1 -> 7] - [ 4 -> 10] MA0033 FREAC-7 ( 8) 2.0938 [ 1 -> 8] - [ 2 -> 9] MA0084 SRY ( 9) 2.5381 [ 1 -> 8] - [ 4 -> 11] MOTIF_10 12 MA0057 MZF_5-13 (10) 2.2432 [ 5 -> 10] - [ 1 -> 6] MA0027 EN-1 (11) 2.7104 [ 1 -> 6] - [ 7 -> 12] MA0018 CREB (12) 2.5606 [ 1 -> 7] - [ 6 -> 12] MA0017 COUP-TF (14) 3.0601 [ 1 -> 6] - [ 9 -> 14] MA0108 TBP (15) 3.0653 [ 1 -> 7] - [ 9 -> 15] MA0060 NF-Y (16) 2.7636 [ 6 -> 12] - [ 1 -> 7] MA0051 Irf-2 (18) 3.9427 [ 1 -> 6] - [13 -> 18] MA0073 RREB-1 (20) 2.2411 [ 1 -> 6] - [15 -> 20] MA0007 Androgen (22) 2.0571 [ 1 -> 12] - [ 8 -> 19] MA0068 Pax-4 (30) 2.4710 [ 1 -> 6] - [25 -> 30] MA0037 GATA-3 ( 6) 2.4095 [ 1 -> 6] - [ 7 -> 12] MA0081 SPI-B ( 7) 4.0471 [ 1 -> 6] - [ 7 -> 12] MA0099 c-FOS ( 8) 2.8501 [ 3 -> 8] - [ 1 -> 6] MA0003 AP2alpha ( 9) 3.5993 [ 1 -> 9] - [ 3 -> 11] MOTIF_11 11 MA0039 Gklf (10) 2.9413 [ 3 -> 10] - [ 1 -> 8] MA0105 p50 (11) 3.4132 [ 6 -> 11] - [ 1 -> 6] MA0070 Pbx (12) 3.0085 [ 1 -> 6] - [ 7 -> 12] MA0069 Pax6 (14) 3.1528 [ 3 -> 11] - [ 1 -> 9] MA0108 TBP (15) 2.9933 [ 1 -> 6] - [10 -> 15] MA0060 NF-Y (16) 2.8707 [ 6 -> 11] - [ 1 -> 6] MA0051 Irf-2 (18) 3.4897 [ 1 -> 8] - [11 -> 18] MA0065 PPARgamma-RXRal (20) 2.7091 [ 5 -> 11] - [ 1 -> 7] MA0007 Androgen (22) 2.7321 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 2.1489 [ 1 -> 6] - [25 -> 30] MA0095 Yin-Yang ( 6) 2.2126 [ 1 -> 6] - [ 2 -> 7] MA0063 Nkx ( 7) 4.6439 [ 1 -> 7] - [ 2 -> 8] MA0109 RUSH1-alfa ( 8) 2.9442 [ 1 -> 7] - [ 5 -> 11] MA0003 AP2alpha ( 9) 2.3350 [ 1 -> 9] - [ 2 -> 10] MOTIF_12 8 MA0038 Gfi (10) 2.5048 [ 1 -> 6] - [ 5 -> 10] MA0111 Spz1 (11) 3.0464 [ 3 -> 8] - [ 1 -> 6] MA0090 TEF-1 (12) 2.4642 [ 1 -> 7] - [ 6 -> 12] MA0069 Pax6 (14) 3.9022 [ 1 -> 6] - [ 9 -> 14] MA0074 RXR-VDR (15) 4.5990 [ 1 -> 8] - [ 4 -> 11] MA0060 NF-Y (16) 2.6538 [ 1 -> 7] - [10 -> 16] MA0051 Irf-2 (18) 5.3267 [ 1 -> 6] - [13 -> 18] MA0065 PPARgamma-RXRal (20) 2.8078 [ 1 -> 6] - [15 -> 20] MA0007 Androgen (22) 3.0420 [ 2 -> 8] - [ 1 -> 7] MA0068 Pax-4 (30) 4.1644 [ 1 -> 6] - [25 -> 30] MA0037 GATA-3 ( 6) 3.2276 [ 1 -> 6] - [ 3 -> 8] MA0081 SPI-B ( 7) 1.6083 [ 1 -> 6] - [ 3 -> 8] MA0067 Pax-2 ( 8) 3.6596 [ 3 -> 8] - [ 1 -> 6] MA0077 SOX-9 ( 9) 4.1787 [ 1 -> 7] - [ 3 -> 9] MOTIF_13 12 MA0039 Gklf (10) 1.8470 [ 1 -> 10] - [ 3 -> 12] MA0027 EN-1 (11) 3.2108 [ 1 -> 9] - [ 4 -> 12] MA0090 TEF-1 (12) 2.3044 [ 7 -> 12] - [ 1 -> 6] MA0069 Pax6 (14) 1.9253 [ 1 -> 6] - [ 9 -> 14] MA0108 TBP (15) 3.0659 [ 1 -> 12] - [ 4 -> 15] MA0060 NF-Y (16) 3.3352 [ 1 -> 7] - [10 -> 16] MA0051 Irf-2 (18) 2.8754 [ 1 -> 6] - [13 -> 18] MA0014 Bsap (20) 2.8772 [ 7 -> 12] - [ 1 -> 6] MA0007 Androgen (22) 2.5524 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 2.1149 [ 1 -> 6] - [25 -> 30] MA0056 MZF_1-4 ( 6) 1.7513 [ 1 -> 6] - [ 5 -> 10] MA0081 SPI-B ( 7) 3.4859 [ 1 -> 7] - [ 5 -> 11] MA0109 RUSH1-alfa ( 8) 2.7851 [ 1 -> 8] - [ 4 -> 11] MA0077 SOX-9 ( 9) 2.8049 [ 3 -> 9] - [ 1 -> 7] MOTIF_14 11 MA0079 SP1 (10) 1.9333 [ 2 -> 10] - [ 1 -> 9] MA0105 p50 (11) 3.6392 [ 1 -> 6] - [ 6 -> 11] MA0090 TEF-1 (12) 2.4800 [ 1 -> 6] - [ 7 -> 12] MA0030 FREAC-2 (14) 3.1188 [ 6 -> 11] - [ 1 -> 6] MA0108 TBP (15) 3.0838 [ 1 -> 8] - [ 8 -> 15] MA0060 NF-Y (16) 2.5157 [ 4 -> 11] - [ 1 -> 8] MA0051 Irf-2 (18) 3.4813 [ 1 -> 6] - [13 -> 18] MA0088 Staf (20) 1.8608 [ 1 -> 11] - [ 3 -> 13] MA0007 Androgen (22) 2.4902 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 2.4448 [ 1 -> 6] - [25 -> 30] MA0095 Yin-Yang ( 6) 2.0789 [ 1 -> 6] - [ 4 -> 9] MA0081 SPI-B ( 7) 4.4689 [ 1 -> 7] - [ 3 -> 9] MA0032 FREAC-3 ( 8) 3.5493 [ 1 -> 6] - [ 6 -> 11] MA0003 AP2alpha ( 9) 3.0804 [ 2 -> 9] - [ 1 -> 8] MOTIF_15 8 MA0062 NRF-2 (10) 2.1273 [ 2 -> 8] - [ 1 -> 7] MA0027 EN-1 (11) 4.4195 [ 3 -> 8] - [ 1 -> 6] MA0090 TEF-1 (12) 1.8174 [ 1 -> 8] - [ 5 -> 12] MA0069 Pax6 (14) 4.3004 [ 1 -> 8] - [ 1 -> 8] MA0108 TBP (15) 4.3123 [ 1 -> 6] - [10 -> 15] MA0060 NF-Y (16) 4.8855 [ 1 -> 6] - [11 -> 16] MA0051 Irf-2 (18) 4.8474 [ 1 -> 7] - [12 -> 18] MA0106 p53 (20) 2.6822 [ 1 -> 8] - [10 -> 17] MA0007 Androgen (22) 3.4273 [ 2 -> 8] - [ 1 -> 7] MA0068 Pax-4 (30) 4.5887 [ 1 -> 8] - [17 -> 24] MA0103 deltaEF1 ( 6) 3.3817 [ 1 -> 6] - [ 1 -> 6] MA0081 SPI-B ( 7) 3.4608 [ 1 -> 7] - [ 2 -> 8] MA0109 RUSH1-alfa ( 8) 3.3894 [ 3 -> 8] - [ 1 -> 6] MA0076 SAP-1 ( 9) 3.5052 [ 2 -> 8] - [ 1 -> 7] MOTIF_2 11 MA0039 Gklf (10) 1.4584 [ 2 -> 10] - [ 1 -> 9] MA0111 Spz1 (11) 2.5558 [ 1 -> 11] - [ 1 -> 11] MA0083 SRF (12) 2.5756 [ 6 -> 11] - [ 1 -> 6] MA0069 Pax6 (14) 3.4415 [ 1 -> 11] - [ 3 -> 13] MA0108 TBP (15) 2.6260 [ 1 -> 8] - [ 8 -> 15] MA0060 NF-Y (16) 2.7566 [ 1 -> 6] - [11 -> 16] MA0051 Irf-2 (18) 4.3153 [ 1 -> 7] - [12 -> 18] MA0066 PPARgamma (20) 1.9871 [ 1 -> 6] - [15 -> 20] MA0007 Androgen (22) 2.4358 [ 1 -> 7] - [16 -> 22] MA0068 Pax-4 (30) 1.8450 [ 1 -> 7] - [24 -> 30] MA0056 MZF_1-4 ( 6) 1.2840 [ 1 -> 6] - [ 6 -> 11] MA0081 SPI-B ( 7) 2.6675 [ 1 -> 6] - [ 6 -> 11] MA0067 Pax-2 ( 8) 2.7747 [ 2 -> 8] - [ 1 -> 7] MA0003 AP2alpha ( 9) 2.8129 [ 2 -> 9] - [ 1 -> 8] MOTIF_3 12 MA0062 NRF-2 (10) 2.5323 [ 1 -> 7] - [ 6 -> 12] MA0111 Spz1 (11) 3.0583 [ 1 -> 6] - [ 7 -> 12] MA0041 HFH-2 (12) 2.2910 [ 1 -> 7] - [ 6 -> 12] MA0046 HNF-1 (14) 2.6662 [ 3 -> 12] - [ 1 -> 10] MA0108 TBP (15) 2.7416 [ 6 -> 12] - [ 1 -> 7] MA0051 Irf-2 (18) 3.2060 [ 1 -> 12] - [ 4 -> 15] MA0065 PPARgamma-RXRal (20) 2.9969 [ 1 -> 11] - [10 -> 20] MA0080 SPI-1 ( 6) 2.0750 [ 1 -> 6] - [ 3 -> 8] MA0081 SPI-B ( 7) 1.5498 [ 1 -> 7] - [ 6 -> 12] MA0031 FREAC-4 ( 8) 2.9706 [ 3 -> 8] - [ 1 -> 6] MA0078 SOX17 ( 9) 3.7122 [ 1 -> 8] - [ 5 -> 12] MOTIF_4 8 MA0052 MEF2 (10) 1.9148 [ 3 -> 8] - [ 1 -> 6] MA0040 HFH-1 (11) 2.6503 [ 1 -> 8] - [ 1 -> 8] MA0042 HFH-3 (12) 1.3786 [ 1 -> 8] - [ 5 -> 12] MA0046 HNF-1 (14) 1.4396 [ 1 -> 8] - [ 5 -> 12] MA0108 TBP (15) 2.4519 [ 1 -> 8] - [ 1 -> 8] MA0060 NF-Y (16) 3.6226 [ 1 -> 8] - [ 7 -> 14] MA0051 Irf-2 (18) 3.5502 [ 1 -> 8] - [10 -> 17] MA0014 Bsap (20) 3.3173 [ 1 -> 8] - [ 1 -> 8] MA0007 Androgen (22) 3.6463 [ 2 -> 8] - [ 1 -> 7] MA0068 Pax-4 (30) 2.2037 [ 1 -> 8] - [ 1 -> 8] MA0080 SPI-1 ( 6) 3.9195 [ 1 -> 6] - [ 3 -> 8] MA0087 Sox-5 ( 7) 2.2138 [ 1 -> 7] - [ 1 -> 7] MA0031 FREAC-4 ( 8) 1.7038 [ 3 -> 8] - [ 1 -> 6] MA0084 SRY ( 9) 1.3769 [ 1 -> 7] - [ 3 -> 9] MOTIF_5 8 MA0028 Elk-1 (10) 3.8530 [ 3 -> 8] - [ 1 -> 6] MA0040 HFH-1 (11) 3.8643 [ 2 -> 8] - [ 1 -> 7] MA0055 Myf (12) 1.2108 [ 1 -> 8] - [ 2 -> 9] MA0069 Pax6 (14) 3.8614 [ 1 -> 8] - [ 5 -> 12] MA0108 TBP (15) 4.2597 [ 1 -> 8] - [ 8 -> 15] MA0060 NF-Y (16) 4.3234 [ 1 -> 6] - [11 -> 16] MA0051 Irf-2 (18) 3.4877 [ 1 -> 8] - [11 -> 18] MA0106 p53 (20) 3.9858 [ 1 -> 7] - [14 -> 20] MA0007 Androgen (22) 3.3028 [ 1 -> 8] - [12 -> 19] MA0068 Pax-4 (30) 4.0180 [ 1 -> 8] - [ 8 -> 15] MA0035 GATA-1 ( 6) 3.4338 [ 1 -> 6] - [ 2 -> 7] MA0087 Sox-5 ( 7) 4.1327 [ 1 -> 6] - [ 3 -> 8] MA0100 c-MYB_1 ( 8) 1.0517 [ 3 -> 8] - [ 1 -> 6] MA0077 SOX-9 ( 9) 3.2577 [ 1 -> 6] - [ 4 -> 9] MOTIF_6 11 MA0057 MZF_5-13 (10) 2.1326 [ 3 -> 10] - [ 1 -> 8] MA0040 HFH-1 (11) 3.1189 [ 1 -> 6] - [ 6 -> 11] MA0042 HFH-3 (12) 2.1529 [ 6 -> 11] - [ 1 -> 6] MA0069 Pax6 (14) 2.3554 [ 4 -> 11] - [ 1 -> 8] MA0108 TBP (15) 3.0122 [ 1 -> 8] - [ 8 -> 15] MA0060 NF-Y (16) 3.7666 [ 1 -> 9] - [ 8 -> 16] MA0051 Irf-2 (18) 3.7251 [ 1 -> 8] - [11 -> 18] MA0073 RREB-1 (20) 2.2046 [ 1 -> 11] - [ 6 -> 16] MA0007 Androgen (22) 2.5253 [ 1 -> 7] - [16 -> 22] MA0068 Pax-4 (30) 2.6405 [ 1 -> 11] - [18 -> 28] MA0006 Ahr-ARNT ( 6) 2.6763 [ 1 -> 6] - [ 1 -> 6] MA0081 SPI-B ( 7) 4.3273 [ 1 -> 7] - [ 1 -> 7] MA0032 FREAC-3 ( 8) 2.1002 [ 1 -> 7] - [ 5 -> 11] MA0078 SOX17 ( 9) 2.8918 [ 1 -> 6] - [ 6 -> 11] MOTIF_7 11 MA0092 Thing1-E47 (10) 1.5755 [ 1 -> 6] - [ 6 -> 11] MA0040 HFH-1 (11) 3.5468 [ 1 -> 6] - [ 6 -> 11] MA0048 Hen-1 (12) 2.4820 [ 2 -> 11] - [ 1 -> 10] MA0069 Pax6 (14) 2.5163 [ 1 -> 6] - [ 9 -> 14] MA0108 TBP (15) 3.2357 [ 1 -> 7] - [ 9 -> 15] MA0060 NF-Y (16) 2.2264 [ 1 -> 6] - [11 -> 16] MA0051 Irf-2 (18) 3.0357 [ 1 -> 7] - [12 -> 18] MA0073 RREB-1 (20) 2.2891 [ 1 -> 6] - [15 -> 20] MA0007 Androgen (22) 3.0771 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 2.3602 [ 3 -> 11] - [ 1 -> 9] MA0103 deltaEF1 ( 6) 1.4238 [ 1 -> 6] - [ 5 -> 10] MA0063 Nkx ( 7) 3.9546 [ 1 -> 7] - [ 1 -> 7] MA0100 c-MYB_1 ( 8) 2.0995 [ 1 -> 8] - [ 3 -> 10] MA0002 AML-1 ( 9) 2.2480 [ 1 -> 6] - [ 6 -> 11] MOTIF_8 12 MA0092 Thing1-E47 (10) 2.0279 [ 5 -> 10] - [ 1 -> 6] MA0027 EN-1 (11) 2.7197 [ 1 -> 6] - [ 7 -> 12] MA0055 Myf (12) 1.9651 [ 1 -> 6] - [ 7 -> 12] MA0029 Evi-1 (14) 3.1775 [ 7 -> 12] - [ 1 -> 6] MA0108 TBP (15) 3.4763 [ 1 -> 6] - [10 -> 15] MA0060 NF-Y (16) 2.0810 [ 5 -> 12] - [ 1 -> 8] MA0051 Irf-2 (18) 4.5113 [ 1 -> 6] - [13 -> 18] MA0065 PPARgamma-RXRal (20) 2.7799 [ 7 -> 12] - [ 1 -> 6] MA0007 Androgen (22) 3.3323 [ 1 -> 6] - [17 -> 22] MA0068 Pax-4 (30) 3.0164 [ 1 -> 7] - [24 -> 30] MA0103 deltaEF1 ( 6) 1.3891 [ 1 -> 6] - [ 1 -> 6] MA0063 Nkx ( 7) 4.6144 [ 1 -> 7] - [ 5 -> 11] MA0109 RUSH1-alfa ( 8) 2.4225 [ 3 -> 8] - [ 1 -> 6] MA0003 AP2alpha ( 9) 2.5445 [ 3 -> 9] - [ 1 -> 7] MOTIF_9 12 MA0079 SP1 (10) 1.7754 [ 1 -> 9] - [ 4 -> 12] MA0027 EN-1 (11) 3.4718 [ 1 -> 10] - [ 3 -> 12] MA0048 Hen-1 (12) 2.3771 [ 1 -> 8] - [ 5 -> 12] MA0030 FREAC-2 (14) 2.9138 [ 7 -> 12] - [ 1 -> 6] MA0108 TBP (15) 2.5808 [ 1 -> 7] - [ 9 -> 15] MA0060 NF-Y (16) 2.4943 [ 6 -> 12] - [ 1 -> 7] MA0051 Irf-2 (18) 3.4672 [ 1 -> 7] - [12 -> 18] MA0065 PPARgamma-RXRal (20) 2.2541 [ 7 -> 12] - [ 1 -> 6] MA0007 Androgen (22) 2.0763 [ 1 -> 7] - [16 -> 22] MA0068 Pax-4 (30) 2.3386 [ 1 -> 8] - [23 -> 30] MA0056 MZF_1-4 ( 6) 1.4763 [ 1 -> 6] - [ 4 -> 9] MA0081 SPI-B ( 7) 3.0582 [ 1 -> 6] - [ 7 -> 12] MA0032 FREAC-3 ( 8) 2.9465 [ 1 -> 6] - [ 7 -> 12] MA0003 AP2alpha ( 9) 2.8072 [ 4 -> 9] - [ 1 -> 6]