Version 2008-01-25/07:59:58.
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Notes on the PEDEL-AA algorithms.
Paste in your nucleotide sequence:
(Replace with your own sequence; raw text without any header line; just the part you want to mutate; make sure it is in the amino acid frame and has no in-frame stop codons!)
Maximum sequence length is 50000 nt.
Library size:
Nucleotide mutation matrix (non-negative numbers):
(Overall scaling is unimportant as this is taken from the 'mean number of substitutions per daughter sequence' parameter.)
These are normalized unnormalized values (see note).
Mean number of nucleotide substitutions per daughter sequence: .
Use Poisson or both Poisson and PCR distributions (see note; PCR efficiency calculator).
If 'PCR distribution' selected: number of PCR cycles , PCR efficiency .
Indel parameters:
Mean number of insertions per daughter sequence:
Mean number of deletions per daughter sequence:
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